Software for Biomolecules for Therapeutics
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This page is design to provide brief description of software packages or web services at OSDDlinux important for designing biotherapeutics. In OSDDlinux we have divided in categories i) All for all type of software, ii) Webservers for web services, iii) Galaxy for software
integated in Galaxy, iv) GUI for graphics based software, v) Third for software not belongs to Raghava's group
Sr. NO. Software name Usage
1
CellPPD
CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs).
2
ToxinPred
ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides.
3
DesiRM
Designing of complementary and mismatch siRNAs
4
AntiBP
Antibp server predicts the antibacterial peptides in a protein sequence.
5
AntiBP2
AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence.
Sr. NO. Software name Usage
1 CellPPD CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs).
2 ToxinPred ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides.
3 DesiRM Designing of complementary and mismatch siRNAs
4 Antibp Antibp server predicts the antibacterial peptides in a protein sequence.
5 Antibp2 AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence.
Sr. NO. Software name Usage
1
CellPPD
cellppd.pl -i input.fasta -o out -t 0.5 -m 1 -i Sequence in FASTA format -o out put file -t SVM threshold -m Method
2
ToxinPred
toxinpred.pl -i example.fasta -o out -t 0.5 -m 1
3
DesiRM
./desirm_sirna.pl -i input_file -t threshold_of_svm -o output_file
4
Antibp
antibp.pl -i input_file -o output -p path
5
Antibp2
antibp2.pl -i input_file -o output -p path
Name
Description
Usage
CellPPD
CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs).
cellppd.pl -i input.fasta -o out -t 0.5 -m 1 -i Sequence in FASTA format -o out put file -t SVM threshold -m Method
ToxinPred
ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides.
toxinpred.pl -i example.fasta -o out -t 0.5 -m 1
DesiRM
Designing of complementary and mismatch siRNAs
./desirm_sirna.pl -i input_file -t threshold_of_svm -o output_file
Antibp
Antibp server predicts the antibacterial peptides in a protein sequence.
antibp.pl -i input_file -o output -p path
Antibp2
AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence.
antibp2.pl -i input_file -o output -p path
Software name Description
Coming soon
Software name Description
Coming soon