Software for Biomolecules for Therapeutics


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This page is design to provide brief description of software packages or web services at OSDDlinux important for designing biotherapeutics. In OSDDlinux we have divided in categories i) All for all type of software, ii) Webservers for web services, iii) Galaxy for software integated in Galaxy, iv) GUI for graphics based software, v) Third for software not belongs to Raghava's group

Sr. NO.Software nameUsage
1 CellPPD CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs).
2 ToxinPred ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides.
3 DesiRM Designing of complementary and mismatch siRNAs
4 AntiBP Antibp server predicts the antibacterial peptides in a protein sequence.
5 AntiBP2 AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence.

Sr. NO.Software nameUsage
1 CellPPD CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs).
2 ToxinPred ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides.
3 DesiRM Designing of complementary and mismatch siRNAs
4 Antibp Antibp server predicts the antibacterial peptides in a protein sequence.
5 Antibp2 AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence.

Sr. NO.Software nameUsage
1 CellPPD cellppd.pl -i input.fasta -o out -t 0.5 -m 1 -i Sequence in FASTA format -o out put file -t SVM threshold -m Method
2 ToxinPred toxinpred.pl -i example.fasta -o out -t 0.5 -m 1
3 DesiRM ./desirm_sirna.pl -i input_file -t threshold_of_svm -o output_file
4 Antibp antibp.pl -i input_file -o output -p path
5 Antibp2 antibp2.pl -i input_file -o output -p path

Name Description Usage
CellPPD CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs). cellppd.pl -i input.fasta -o out -t 0.5 -m 1 -i Sequence in FASTA format -o out put file -t SVM threshold -m Method
ToxinPred ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides. toxinpred.pl -i example.fasta -o out -t 0.5 -m 1
DesiRM Designing of complementary and mismatch siRNAs ./desirm_sirna.pl -i input_file -t threshold_of_svm -o output_file
Antibp Antibp server predicts the antibacterial peptides in a protein sequence. antibp.pl -i input_file -o output -p path
Antibp2 AntiBP2 is a improved server predicts the antibacterial peptides in a protein sequence. antibp2.pl -i input_file -o output -p path

Software nameDescription
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Software nameDescription
Coming soon