| Links related to peptide tertiary structure prediction |
| 1 | PEPstrMOD | Peptide tertiary structure prediction server with non-natural modifications. |
| 2 | PEPstr | Peptide tertiary structure prediction server. |
| 3 | PEP-FOLD | An updated de novo peptide structure prediction server. |
| Links related to resources for Molecular Dynamics Simulations |
| 1 | GROMACS | GROMACS (GROningen MAchine for Chemical Simulations) is a molecular dynamics package primarily designed for simulations of proteins, lipids and nucleic acids. |
| 2 | AMBER | Amber is a package of programs for molecular dynamics simulations of proteins and nucleic acids. |
| 3 | Forcefield_NCAA | AMBER Forcefield Parameters for Non-canonical Amino Acids. |
| 4 | Forcefield_PTM | AMBER Forcefield Parameters for Post-translational Modifications. |
| 5 | SwissSideChain | A molecular and structural database of non-natural side chains. |
| 6 | Vienna-PTM web server | A toolkit for MD simulations of protein post-translational modifications |
| Other links related to peptides |
| 1 | PEP-SiteFinder | A service to identify candidate protein-peptide interaction sites. |
| 2 | PepBind | A comprehensive database and computational tool for analysis of protein-peptide interactions. |
| 3 | PeptiSite | A structural database of peptide binding sites. |
| 4 | DOMINO | A database of domain peptide interactions. |
| 5 | SPdb | Signal peptide database. |
| 6 | PCSS Server | Peptide classification using sequence and structure |
| 7 | SignalP | A webserver for discriminating signal peptides from transmembrane regions. |
| 8 | Rosetta FlexPepDock | High resolution modeling of peptide-protein interactions. |
| 9 | PeptiMap | Detection of peptide binding sites on protein surfaces. |
| Peptide based resources from our group |
| 1 | SATPdb | A database of structurally annotated therapeutic peptides |
| 2 | AntiAngioPred | A server for prediction of anti-angiogenic peptides |
| 3 | CancerPPD | A database of anticancer peptides |
| 4 | AHTPDB | A platform for analysis and presentation of antihypertensive peptides. |
| 5 | Hemolytik | A database of experimentally determined hemolytic and non-hemolytic peptides. |
| 6 | ParaPep | A database of anti-parasitic peptides. |
| 7 | CPPsite | A curated database of cell penetrating peptides. |
| 8 | CellPPD | In silico approaches for designing highly effective cell penetrating peptides. |
| 9 | TumorHoPe | A database of tumor homing peptides. |
| 10 | TumorHPD | Computational approaches for designing tumor homing peptides. |
| 11 | ToxinPred | In silico approach for predicting toxicity of peptides and proteins. |