Acknowledgement
| 1 | PEPstr | Peptide Tertiary Structure Prediction Server. |
| 2 | AMBER | Amber is a package of programs for molecular dynamics simulations of proteins and nucleic acids. |
| 3 | GROMACS | GROMACS (GROningen MAchine for Chemical Simulations) is a molecular dynamics package primarily designed for simulations of proteins, lipids and nucleic acids. |
| 4 | Forcefield_NCAA | AMBER Forcefield Parameters for Non-canonical Amino Acids. |
| 5 | Forcefield_PTM | AMBER Forcefield Parameters for Post-translational Modifications. |
| 6 | SwissSideChain | A molecular and structural database of non-natural side chains. |
| 7 | BLAST | Basic Local Alignment Search Tool (standalone version) |
| 8 | PSIPRED | Accurate protein secondary structure prediction. |
| 9 | BetaTurns | A server for beta-turn types prediction. |